基于高通量测序对糖尿病肾脏疾病和2型糖尿病肠道菌群失调模式的研究

    Patterns of intestinal flora imbalance in diabetic kidney disease and type 2 diabetes based upon high-throughput sequencing

    • 摘要: 目的 观察2型糖尿病(type 2 diabetes mellitus,T2DM)和糖尿病肾脏疾病(diabetic kidney disease,DKD)患者相对于正常对照人群肠道菌群失调模式,以探寻疾病患者特异的肠道菌群物种。方法 以包头医学院第一附属医院肾内科和内分泌科住院部患者为研究对象,选取20例T2DM患者、20例DKD患者,以及10名DKD患者的健康家属和10名健康体检者作为正常对照(Control),收集粪便标本。采用Illumina高通量测序技术对粪便样本中所有细菌的16S rDNA-V4区进行DNA测序,使用QIIME2对原始序列进行处理、分析。结果 (1)DKD组和T2DM组与正常对照组相比肠道菌群构成差异有统计学意义(P<0.05)。(2)健康受试者中,从门到目水平中最具差异丰度的菌是厚壁菌门(Firmicutes phylum)。葡萄球菌科(Staphylococcaceae families)和穆里巴库鲁姆菌属(Muribaculum genus)在T2DM患者肠道菌群中数量高。棒状杆菌目(Corynebacteriales orders)和艾森伯格氏菌属(Eisenbergiella genus)、劳尔氏菌属(Ralstonia genus)在DKD患者中的富集最具差异性。(3)Muribaculum属的丰度值能相对精准的区别T2DM个体和正常对照(AUC=0.9048),Eisenbergiella属和Muribaculum属的丰度值可区分DKD和T2DM受试者的样本(AUC=0.9091)。结论 DKD患者和T2DM患者部分肠道菌群变化信号一致,但亦有差异。Muribaculum 属可作为区分T2DM患者和正常对照人群肠道微生物标志物,Eisenbergiella属和Muribaculum属可作为区分DKD和T2DM患者的标志物。

       

      Abstract: Objective To explore the patterns of intestinal flora imbalance in patients with type 2 diabetes mellitus (T2DM) and diabetic kidney disease (DKD)as compared to normal controls to examine the specific intestinal flora species of disease patients.Methods Taking inpatients as research objects,20 T2DM patients and 20 DKD counterparts were selected while 10 healthy family members of DKD patients and 10 healthy physical examination subjects as normal controls (control).Their stool samples were collected.Illumina high-throughput sequencing technology was employed for DNA sequencing at 16SrDNA-V4 region of all bacteria in stool samples.And QIIME2 was utilized for process and analyze the original sequence.Results Compared with normal control group,DKD and T2DM groups had significant differences in the composition of intestinal flora (P<0.05).From phylum to mesh level,the bacteria with the most differential abundance among healthy subjects was Firmicutes.Staphylococcaceae families and Muribaculum genus had high numbers of intestinal flora in T2DM patients.Corynebacteriales order,Eisenbergiella genu and Ralstonia genus showed the most difference in the enrichment of DKD patients.The abundance value of Muribaculum genusis was relatively accurate to distinguish T2DM patients and normal controls (AUC=0.9048).The abundance values of genera Eisenbergiella and Muribaculum could distinguish the samples of DKD and T2DM subjects (AUC=0.9091).Conclusions DKD and T2DM patients have the same signal of changes in intestinal flora.However,there are also differences.Muribaculum genus can be used as a gut microbial marker for distinguishing T2DM patients from normal controls.Genera Eisenbergiella and Muribaculum can be used as markers for distinguishing DKD and T2DM patients.

       

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